PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006552.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 247aa    MW: 28060.2 Da    PI: 10.2059
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006552.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.24.4e-38141401128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...tksgyWkatgkdkevlsk 95 
                  lp G+rFhPtdeelvv+yLk+kv g +l++  vi+e+d+++++Pw+Lp ++   +++ yfFs+++ +   g++ +r+   + sgyWk  gk k+++++
  CCG006552.1  14 LPIGYRFHPTDEELVVHYLKRKVLGLPLPA-AVIPEFDVFQTDPWSLPGNL---KEKRYFFSQKKLND-FGTKCKRSagsVPSGYWKPVGKGKQIVAS 106
                  699***************************.89***************544...4578***9987765.4666666412256*************999 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++++vg++ktLvf + ++++ ++t+Wvmhey l
  CCG006552.1 107 gSNQAVGIRKTLVFRERNHSSKTRTQWVMHEYCL 140
                  66778**********9999999**********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-4211165IPR003441NAC domain
PROSITE profilePS5100542.8414165IPR003441NAC domain
PfamPF023654.4E-2415140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MERPNFVENG GLKLPIGYRF HPTDEELVVH YLKRKVLGLP LPAAVIPEFD VFQTDPWSLP  60
GNLKEKRYFF SQKKLNDFGT KCKRSAGSVP SGYWKPVGKG KQIVASGSNQ AVGIRKTLVF  120
RERNHSSKTR TQWVMHEYCL VGLPTDPKTT QMKVGDWVAI SIFHRKRKPK KNHVVMISNP  180
SNINKRQNVE IISPSFMDFM MEQSSDEAGA PSQCSSGVTE VSSNEFDQEE ISSFISLFSY  240
PCKRKRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B3e-281217115171NAC domain-containing protein 19
4dul_A3e-281217115171NAC domain-containing protein 19
1ut7_B3e-281217115171NO APICAL MERISTEM PROTEIN
1ut7_A3e-281217115171NO APICAL MERISTEM PROTEIN
1ut4_B3e-281217115171NO APICAL MERISTEM PROTEIN
1ut4_A3e-281217115171NO APICAL MERISTEM PROTEIN
3swp_D3e-281217118174NAC domain-containing protein 19
3swp_C3e-281217118174NAC domain-containing protein 19
3swp_B3e-281217118174NAC domain-containing protein 19
3swp_A3e-281217118174NAC domain-containing protein 19
3swm_D3e-281217118174NAC domain-containing protein 19
3swm_C3e-281217118174NAC domain-containing protein 19
3swm_B3e-281217118174NAC domain-containing protein 19
3swm_A3e-281217118174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699960.0KP769996.1 Populus tomentosa NAC domain transcription factor (Potri.017G063300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013869.10.0PREDICTED: NAC domain-containing protein 68-like
RefseqXP_011045764.10.0PREDICTED: NAC domain-containing protein 68
TrEMBLB9GF720.0B9GF72_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-51NAC domain containing protein 83